11/11/2023 0 Comments R install package non zero exit status![]() Gcc -I"/usr/lib64/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I./inst/include/ -DDOTCAL64_PRIVATE -fPIC -O2 -pipe -Wformat -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector -param=ssp-buffer-size=4 -c dotCall64helpers.c -o dotCall64helpers.o Gcc -I"/usr/lib64/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I./inst/include/ -DDOTCAL64_PRIVATE -fPIC -O2 -pipe -Wformat -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector -param=ssp-buffer-size=4 -c dotCall64.c -o dotCall64.o Installation of package ‘terra’ had non-zero exit status * removing ‘/./R/x86_64-mandriva-linux-gnu-library/4.2/oceanmap’Ĭonfigure: error: gdal-config not found or not executable.ĮRROR: configuration failed for package ‘terra’ configure -with-nc-config=/sw/dist/netcdf4/bin/nc-configĮRROR: configuration failed for package ‘ncdf4’ The nc-config script by passing the -with-nc-config=/full/path/nc-config argumentįlag to the configure script. Otherwise, you can specify the full path and name of If you installed the netcdf library (and nc-config) in a standard location, nc-config Netcdf library, version 4.1-beta2 or later, and must be present for configuration ** package ‘Rcpp’ successfully unpacked and MD5 sums checkedĮrror, nc-config not found or not executable. Installation of package ‘dotCall64’ had non-zero exit status Installation of package ‘oceanmap’ had non-zero exit statusĮRROR: compilation failed for package ‘dotCall64’ * removing ‘/home/alunos-p02/R/x86_64-mandriva-linux-gnu-library/4.2/oceanmap’ Installation of package ‘fields’ had non-zero exit statusĮRROR: dependencies ‘raster’, ‘fields’, ‘ncdf4’ are not available for package ‘oceanmap’ See, please (just an extract, I cut some bla-bla-bla that seemed OK):ĮRROR: dependency ‘spam’ is not available for package ‘fields’ But I still got problems and got stuck, again. at some point PCLinuxOS installed 145 files :-P ). I've installed a bunch of gcc libs and some more (things that R-Studio pointed out as missing or wrong. With your clues I realized I had to look at some lib errors, beyond the dependencies (that R-Studio says it would resolve). Installation of package ‘markdown’ had non-zero exit status * removing ‘/home/alunos-p02/R/x86_64-mandriva-linux-gnu-library/4.2/markdown’ bin/sh: linha 3: g++: comando não encontradoĮRROR: dependency ‘xfun’ is not available for package ‘markdown’ Gcc -I"/usr/lib64/R/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -pipe -Wformat -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector -param=ssp-buffer-size=4 -c init.c -o init.o Gcc -I"/usr/lib64/R/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -pipe -Wformat -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector -param=ssp-buffer-size=4 -c base64.c -o base64.o ![]() ** package ‘xfun’ successfully unpacked and MD5 sums checked Installation of package ‘xfun’ had non-zero exit status ![]() ![]() Make: *** Erro 127ĮRROR: compilation failed for package ‘xfun’ * The requested package is not installed in the cache - nothing to do.Code: /bin/sh: linha 3: g++: comando não encontrado I tried purging the cache with package renv: > purge( "gdalUtils" ) Package ‘gdalUtils’ is not available for this version of RĪnd I can't remove it: Removing package from ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’Įrror in remove.packages : there is no package called ‘gdalUtils’ I can't install it now: > install.packages("gdalUtils") Installation of package ‘testthat’ had non-zero exit status Installation of package ‘pkgbuild’ had non-zero exit statusĮrror in loadNamespace(x) : there is no package called ‘gdalUtils’ I don't need it currently and it isn't installed on my current version's library, but its absence is causing errors when I try to install other packages: Error in loadNamespace(x) : there is no package called ‘gdalUtils’Ĭalls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Long ago I used a package called gdalUtils. ![]()
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